|
週次 |
日期 |
單元主題 |
|
第1週 |
9/09 |
Introduction, using Galaxy <br>
[錄音：http://bioinfo.bime.ntu.edu.tw/~cychen/course/1021-StruBioinformatics/ ] 解壓縮後，用IE開啟index.html |
|
第2週 |
9/16 |
Next-generation sequencing, genome assembly (課程錄音檔改由NTU space的檔案分享下載，請參考公布欄) |
|
第3週 |
9/23 |
Gene prediction |
|
第4週 |
9/30 |
Gene annotation, using blast and blastx |
|
第5週 |
10/07 |
Sequence alignment |
|
第6週 |
10/14 |
Linux practices + Perl programming |
|
第7週 |
10/21 |
Dynamic programming |
|
第8週 |
10/28 |
Using BLAST |
|
第9週 |
11/04 |
Sequence clustering, multiple sequence alignment, phylogenetic trees |
|
第10週 |
11/11 |
Pattern mining, functional residue prediction, catalytic sites |
|
第11週 |
11/18 |
Classification, protein domain, secondary structure prediction |
|
第12週 |
11/25 |
Midterm |
|
第13週 |
12/02 |
Secondary structure prediction, surface residue prediction, DNA/RNA-binding residues |
|
第14週 |
12/09 |
Protein structure prediction and structure analysis |
|
第15週 |
12/16 |
Protein structure prediction, structure-based prediction of protein functional sites |
|
第16週 |
12/23 |
Presentation and discussion on final project proposals, protein structure prediction |
|
第17週 |
12/30 |
Protein structure prediction, molecular docking |
|
第18週 |
01/06 |
Final project demo |